Index

_

__init__() (bioimageflow.engine.CycleInWorkflowError method) (bioimageflow.engine.DefaultEngine method) (bioimageflow.engine.NodePlan method) (bioimageflow.engine.NodeStep method) (bioimageflow.engine.SequentialEngine method) (bioimageflow.engine.WorkerTaskError method) (bioimageflow.env_manager.WetlandsEnvManager method) (bioimageflow.node.ColumnRef method) (bioimageflow.node.Node method) (bioimageflow.registry.ToolMetadata method) (bioimageflow.registry.ToolRegistry method) (bioimageflow.session.WorkflowSession method) (bioimageflow.storage.CurrentPointer method) (bioimageflow.storage.OutputViewCapability method) (bioimageflow.storage.RecordManifest method) (bioimageflow.storage.Storage method) (bioimageflow.workflow.InvalidatedSelection method) (bioimageflow.workflow.OutputView method) (bioimageflow.workflow.ProgressEvent method) (bioimageflow.workflow.Workflow method) (bioimageflow.workflow.WorkflowEnvironment method) (bioimageflow.workflow.WorkflowInputPort method) (bioimageflow.workflow.WorkflowInputRef method) (bioimageflow.workflow.WorkflowOutputPort method) (bioimageflow.workflow_node.WorkflowNode method) (bioimageflow_core.arguments.Arguments method) (bioimageflow_core.arguments.ExecutionContext method) (bioimageflow_core.environment.EnvironmentSpec method) (bioimageflow_core.environment.ResourceSpec method) (bioimageflow_core.tool.BaseTool method) (bioimageflow_core.tool.IOModel method) (bioimageflow_core.tool.Template method) (bioimageflow_core.types.GUIMeta method) (bioimageflow_core.types.ImageSpec method) (bioimageflow_core.types.SharedArray method)

__new__() (bioimageflow.engine.EnvironmentLifetime method) (bioimageflow.engine.NodePlanStatus method) (bioimageflow_core.tool.Category method) (bioimageflow_core.types.Layout method) (bioimageflow_core.types.Semantic method)

A

accepts_upstream (bioimageflow.dataframe_tool.DataFrameTool attribute) add_edge() (bioimageflow.session.WorkflowSession method) add_node() (bioimageflow.session.WorkflowSession method) allow_flexible_versions (bioimageflow_core.environment.EnvironmentSpec attribute) annotation (bioimageflow.workflow.WorkflowInputPort attribute) (bioimageflow.workflow.WorkflowInputRef attribute) (bioimageflow.workflow.WorkflowOutputPort attribute)

Arguments (class in bioimageflow_core.arguments) asset_digest_and_size() (in module bioimageflow.storage) assets_dir (bioimageflow_core.arguments.ExecutionContext attribute) attempt_id (bioimageflow.storage.CurrentPointer attribute)

B

BaseTool (class in bioimageflow_core.tool) batch_dir (bioimageflow_core.arguments.ExecutionContext attribute) BINARY (bioimageflow_core.types.Semantic attribute) bind_port() (bioimageflow.workflow_node.WorkflowNode method) BindingError bioimageflow.cache module bioimageflow.dataframe_tool module bioimageflow.engine module bioimageflow.env_manager module bioimageflow.node module bioimageflow.registry module bioimageflow.session module bioimageflow.storage module bioimageflow.template module bioimageflow.workflow module

bioimageflow.workflow_node module bioimageflow_core.arguments module bioimageflow_core.environment module bioimageflow_core.io module bioimageflow_core.shm module bioimageflow_core.tool module bioimageflow_core.types module BOTH (bioimageflow_core.types.PathPicker attribute) built-in function check_type_compat() deserialize_constant() get_inputs_schema() serialize_constant() serialize_image_spec() serialize_input_schema() serialize_output_schema() validate_parameters() BY_DEFAULT (bioimageflow_core.types.Connectable attribute)

C

cache_load() (in module bioimageflow.cache) cache_root (bioimageflow.storage.Storage property) CacheCorruptionError cached (bioimageflow.engine.NodePlan property) CACHED (bioimageflow.engine.NodePlanStatus attribute) cached (bioimageflow.engine.NodeStep property) cancel() (bioimageflow.workflow.Workflow method) cancel_requested (bioimageflow.workflow.Workflow property) canonical_dataframe_digest() (in module bioimageflow.storage) canonical_json_bytes() (in module bioimageflow.storage) canonical_scalar_payload() (in module bioimageflow.storage) capture_errors() (bioimageflow.workflow.Workflow method) category (bioimageflow_core.tool.BaseTool attribute) Category (class in bioimageflow_core.tool) check_compatibility() (in module bioimageflow_core.types) check_type_compat() built-in function class_name (bioimageflow.registry.ToolMetadata attribute) CLASSIFICATION (bioimageflow_core.tool.Category attribute) close() (bioimageflow.engine.DefaultEngine method)

code (bioimageflow.storage.OutputViewCapability attribute) COLOCALIZATION (bioimageflow_core.tool.Category attribute) column (bioimageflow.node.ColumnRef attribute) ColumnNotFoundError ColumnRef (class in bioimageflow.node) compute() (bioimageflow.node.Node method) (bioimageflow.workflow.Workflow method) compute_env_hash() (in module bioimageflow.cache) compute_signature_hash() (in module bioimageflow.cache) compute_steps() (bioimageflow.workflow.Workflow method) configure_wetlands() (in module bioimageflow.env_manager) connectable (bioimageflow_core.types.GUIMeta attribute) Connectable (class in bioimageflow_core.types) CONVERSION (bioimageflow_core.tool.Category attribute) cpu (bioimageflow_core.environment.ResourceSpec attribute) create_engine() (bioimageflow.workflow.Workflow method) create_shared_output() (in module bioimageflow_core.shm) current (bioimageflow.workflow.ProgressEvent attribute) CurrentPointer (class in bioimageflow.storage) CycleInWorkflowError

D

dataframe_digest (bioimageflow.storage.RecordManifest attribute) dataframe_lookup() (in module bioimageflow.cache) dataframe_publish() (in module bioimageflow.cache) dataframe_result_key() (in module bioimageflow.cache) DataFrameTool (class in bioimageflow.dataframe_tool) DECONVOLUTION (bioimageflow_core.tool.Category attribute) default (bioimageflow.workflow.WorkflowInputPort attribute) DefaultEngine (class in bioimageflow.engine) dependencies (bioimageflow_core.environment.EnvironmentSpec attribute) description (bioimageflow_core.types.GUIMeta attribute) deserialize_constant() built-in function

detail (bioimageflow.storage.OutputViewCapability attribute) deterministic_serialize() (in module bioimageflow.cache) disable() (bioimageflow.node.Node method) (bioimageflow.workflow.Workflow method) DisabledNodeError DISPLACEMENT (bioimageflow_core.types.Semantic attribute) display_name (bioimageflow.registry.ToolMetadata attribute) (bioimageflow_core.tool.BaseTool attribute) (bioimageflow_core.types.GUIMeta attribute) documentation (bioimageflow_core.tool.BaseTool attribute) downstream_of() (bioimageflow.workflow.Workflow method) dtype (bioimageflow_core.types.SharedArray attribute) dtypes (bioimageflow_core.types.ImageSpec attribute)

E

edges (bioimageflow.session.WorkflowSession property) empty_batch_anchor_inputs (bioimageflow_core.tool.ProcessingTool attribute) enable() (bioimageflow.node.Node method) (bioimageflow.workflow.Workflow method) ENGINE (bioimageflow.engine.EnvironmentLifetime attribute) environment (bioimageflow.engine.NodeStep property) (bioimageflow_core.tool.ProcessingTool attribute) environment_lifetime (bioimageflow.engine.DefaultEngine property) environment_manager (bioimageflow.engine.DefaultEngine property) EnvironmentLifetime (class in bioimageflow.engine) EnvironmentMismatchError EnvironmentSpec (class in bioimageflow_core.environment)

errors (bioimageflow.session.WorkflowSession property) (bioimageflow.workflow.Workflow property) execute() (bioimageflow.engine.DefaultEngine method) (bioimageflow.engine.NodeStep method) execute_steps() (bioimageflow.engine.DefaultEngine method) EXECUTION (bioimageflow.engine.EnvironmentLifetime attribute) ExecutionContext (class in bioimageflow_core.arguments) export() (bioimageflow.workflow.Workflow method) export_outputs() (bioimageflow.workflow.Workflow method) expose_input() (bioimageflow.workflow.Workflow method) EXTERNAL (bioimageflow.engine.EnvironmentLifetime attribute) extract_gui_meta() (in module bioimageflow_core.types)

F

failed_nodes (bioimageflow.session.WorkflowSession property) (bioimageflow.workflow.Workflow property) FEATURE (bioimageflow_core.types.Semantic attribute) FILE (bioimageflow_core.types.PathPicker attribute) final_result_key (bioimageflow.engine.NodePlan attribute) FOLDER (bioimageflow_core.types.PathPicker attribute) forget() (bioimageflow.registry.ToolRegistry method)

formats (bioimageflow_core.types.ImageSpec attribute) from_dict() (bioimageflow.session.WorkflowSession class method) (bioimageflow.storage.CurrentPointer class method) (bioimageflow.storage.RecordManifest class method) (bioimageflow.workflow.Workflow class method) (bioimageflow_core.arguments.ExecutionContext class method) from_python() (bioimageflow.workflow.Workflow class method)

G

get_active_workflow() (in module bioimageflow.node) get_class() (bioimageflow.registry.ToolRegistry method) get_environment() (bioimageflow.workflow.Workflow method) get_inputs_schema() built-in function get_metadata() (bioimageflow.registry.ToolRegistry method) get_or_create() (bioimageflow.env_manager.WetlandsEnvManager method)

get_output_schema() (bioimageflow.node.Node method) get_output_templates() (in module bioimageflow.template) get_shared_environment_manager() (in module bioimageflow.env_manager) gpu (bioimageflow_core.environment.ResourceSpec attribute) gpu_memory (bioimageflow_core.environment.ResourceSpec attribute) group (bioimageflow_core.types.GUIMeta attribute) GUIMeta (class in bioimageflow_core.types)

H

has_fallback() (bioimageflow.workflow.WorkflowInputPort method)

I

id (bioimageflow.workflow.WorkflowInputPort attribute) (bioimageflow.workflow.WorkflowOutputPort attribute) IMAGE_PROCESSING (bioimageflow_core.tool.Category attribute) ImageShared() (in module bioimageflow_core.types) ImageSpec (class in bioimageflow_core.types) import_archive() (bioimageflow.workflow.Workflow class method) IndexAlignmentError input() (bioimageflow.workflow.Workflow method) Inputs (bioimageflow_core.tool.BaseTool attribute) inputs_schema (bioimageflow.registry.ToolMetadata attribute)

install_package() (bioimageflow.registry.ToolRegistry method) INTENSITY (bioimageflow_core.types.Semantic attribute) internal_nodes (bioimageflow.workflow_node.WorkflowNode property) invalidate() (bioimageflow.workflow.Workflow method) InvalidatedSelection (class in bioimageflow.workflow) IOModel (class in bioimageflow_core.tool) is_partial (bioimageflow.workflow.Workflow property) is_running() (bioimageflow.env_manager.WetlandsEnvManager method) iter_dataframe_result_metadata() (in module bioimageflow.cache) iter_processing_result_metadata() (in module bioimageflow.cache)

K

kind (bioimageflow.workflow.WorkflowInputPort attribute) (bioimageflow.workflow.WorkflowInputRef attribute)

L

LABEL (bioimageflow_core.types.Semantic attribute) latest_root (bioimageflow.storage.Storage property) latest_success_run_id() (bioimageflow.storage.Storage method) Layout (class in bioimageflow_core.types) layouts (bioimageflow_core.types.ImageSpec attribute)

list_tools() (bioimageflow.registry.ToolRegistry method) load() (bioimageflow.workflow.Workflow class method) load_current() (bioimageflow.storage.Storage method) load_image() (in module bioimageflow_core.io) logical_signature (bioimageflow.engine.NodePlan attribute)

M

make_node_keys() (in module bioimageflow.storage) make_record_id() (in module bioimageflow.storage) make_result_key() (in module bioimageflow.storage) manifest (bioimageflow.storage.CurrentPointer attribute) map_process_rows() (bioimageflow.env_manager.WetlandsEnvManager method) materialize_latest_node_outputs() (bioimageflow.storage.Storage method) materialize_latest_outputs() (bioimageflow.storage.Storage method) materialize_run_outputs() (bioimageflow.storage.Storage method) max (bioimageflow_core.types.GUIMeta attribute) max_concurrent (bioimageflow_core.environment.ResourceSpec attribute) max_workers (bioimageflow.workflow.WorkflowEnvironment attribute) maximum (bioimageflow.workflow.ProgressEvent attribute) MEASUREMENT (bioimageflow_core.tool.Category attribute) memory (bioimageflow_core.environment.ResourceSpec attribute) merge_dataframes() (bioimageflow.dataframe_tool.DataFrameTool method) message (bioimageflow.workflow.ProgressEvent attribute) min (bioimageflow_core.types.GUIMeta attribute) MISSING (bioimageflow.workflow.Workflow attribute) mode (bioimageflow.storage.OutputViewCapability attribute) (bioimageflow.workflow.OutputView attribute)

module bioimageflow.cache bioimageflow.dataframe_tool bioimageflow.engine bioimageflow.env_manager bioimageflow.node bioimageflow.registry bioimageflow.session bioimageflow.storage bioimageflow.template bioimageflow.workflow bioimageflow.workflow_node bioimageflow_core.arguments bioimageflow_core.environment bioimageflow_core.io bioimageflow_core.shm bioimageflow_core.tool bioimageflow_core.types module (bioimageflow.registry.ToolMetadata attribute)

N

name (bioimageflow.node.Node property) (bioimageflow.workflow.WorkflowEnvironment attribute) (bioimageflow.workflow.WorkflowInputPort attribute) (bioimageflow.workflow.WorkflowInputRef attribute) (bioimageflow.workflow.WorkflowOutputPort attribute) (bioimageflow_core.environment.EnvironmentSpec attribute) (bioimageflow_core.types.SharedArray attribute) ndim (bioimageflow_core.types.Layout property) NEVER (bioimageflow_core.types.Connectable attribute) new_attempt_id() (bioimageflow.storage.Storage method) node (bioimageflow.node.ColumnRef attribute)

Node (class in bioimageflow.node) node_name (bioimageflow.engine.NodePlan attribute) (bioimageflow.engine.NodeStep property) (bioimageflow.workflow.InvalidatedSelection attribute) (bioimageflow.workflow.ProgressEvent attribute) NodePlan (class in bioimageflow.engine) NodePlanStatus (class in bioimageflow.engine) nodes (bioimageflow.session.WorkflowSession property) (bioimageflow.workflow.Workflow property) NodeStep (class in bioimageflow.engine) normalize_dependencies() (in module bioimageflow.cache) NOT_BY_DEFAULT (bioimageflow_core.types.Connectable attribute)

O

open_shared_array() (in module bioimageflow_core.shm) output() (bioimageflow.workflow.Workflow method) output_name_for_id() (bioimageflow.workflow_node.WorkflowNode method) outputs (bioimageflow.storage.RecordManifest attribute)

Outputs (bioimageflow_core.tool.BaseTool attribute) outputs_root (bioimageflow.storage.Storage property) outputs_schema (bioimageflow.registry.ToolMetadata attribute) OutputView (class in bioimageflow.workflow) OutputViewCapability (class in bioimageflow.storage)

P

package (bioimageflow.registry.ToolMetadata attribute) parent_index() (in module bioimageflow_core.arguments) parse_index_lineage() (in module bioimageflow_core.arguments) Passthrough (class in bioimageflow.dataframe_tool) path_picker (bioimageflow_core.types.GUIMeta attribute) PathPicker (class in bioimageflow_core.types) pattern (bioimageflow_core.tool.Template attribute) PENDING_UPSTREAM (bioimageflow.engine.NodePlanStatus attribute) pending_upstreams (bioimageflow.engine.NodePlan attribute) plan() (bioimageflow.engine.DefaultEngine method) (bioimageflow.session.WorkflowSession method) (bioimageflow.workflow.Workflow method) PLANAR (bioimageflow_core.types.Layout attribute) PLANAR_CHANNEL (bioimageflow_core.types.Layout attribute) PLANAR_TIME (bioimageflow_core.types.Layout attribute)

PLANAR_TIME_CHANNEL (bioimageflow_core.types.Layout attribute) policy (bioimageflow.storage.CurrentPointer attribute) port_id (bioimageflow.workflow.WorkflowInputRef attribute) prepare() (bioimageflow.engine.NodeStep method) PRIOR_SELECTION_MISS (bioimageflow.engine.NodePlanStatus attribute) PROBABILITY (bioimageflow_core.types.Semantic attribute) probe_output_view_mode() (bioimageflow.storage.Storage method) process_batch() (bioimageflow_core.tool.ProcessingTool method) process_row() (bioimageflow_core.tool.ProcessingTool method) processing_lookup() (in module bioimageflow.cache) processing_prepare_attempt() (in module bioimageflow.cache) processing_publish() (in module bioimageflow.cache) processing_result_key() (in module bioimageflow.cache) ProcessingTool (class in bioimageflow_core.tool) ProgressEvent (class in bioimageflow.workflow)

R

record_id (bioimageflow.storage.CurrentPointer attribute) (bioimageflow.storage.RecordManifest attribute) (bioimageflow.workflow.ProgressEvent attribute) RecordManifest (class in bioimageflow.storage) register_package() (bioimageflow.registry.ToolRegistry method) register_workflow() (bioimageflow.registry.ToolRegistry method) REGISTRATION (bioimageflow_core.tool.Category attribute) remove_edge() (bioimageflow.session.WorkflowSession method) remove_node() (bioimageflow.session.WorkflowSession method) resolve_merge_schema() (bioimageflow.dataframe_tool.DataFrameTool class method) resolve_outputs() (bioimageflow.dataframe_tool.DataFrameTool class method) resolve_template() (in module bioimageflow.template) resources (bioimageflow_core.tool.ProcessingTool attribute) ResourceSpec (class in bioimageflow_core.environment) RESTORATION (bioimageflow_core.tool.Category attribute) result_dir() (bioimageflow.storage.Storage method)

result_key (bioimageflow.storage.CurrentPointer attribute) (bioimageflow.storage.RecordManifest attribute) (bioimageflow.workflow.InvalidatedSelection attribute) (bioimageflow.workflow.ProgressEvent attribute) result_shard_parts() (in module bioimageflow.storage) row (bioimageflow.workflow.ProgressEvent attribute) row_dir (bioimageflow_core.arguments.ExecutionContext attribute) row_index (bioimageflow_core.arguments.ExecutionContext attribute) rows_dir (bioimageflow_core.arguments.ExecutionContext attribute) run_dir (bioimageflow_core.arguments.ExecutionContext attribute) run_dir() (bioimageflow.storage.Storage method) run_empty_batch (bioimageflow_core.tool.ProcessingTool attribute) run_id (bioimageflow.storage.CurrentPointer attribute) run_node_dir() (bioimageflow.storage.Storage method) running_environments() (bioimageflow.env_manager.WetlandsEnvManager method) runs_root (bioimageflow.storage.Storage property)

S

save_image() (in module bioimageflow_core.io) SCALAR_IMAGE_SEMANTICS (in module bioimageflow_core.types) schema (bioimageflow.storage.CurrentPointer attribute) (bioimageflow.storage.RecordManifest attribute) (bioimageflow.workflow.WorkflowInputPort attribute) (bioimageflow.workflow.WorkflowOutputPort attribute) SchemaSerializationError scope (bioimageflow.workflow.OutputView attribute) scoped_node_names() (in module bioimageflow.node) SEGMENTATION (bioimageflow_core.tool.Category attribute) select_current_record() (bioimageflow.storage.Storage method) selected_at (bioimageflow.storage.CurrentPointer attribute) selected_record_id (bioimageflow.engine.NodePlan attribute) (bioimageflow.workflow.InvalidatedSelection attribute) Semantic (class in bioimageflow_core.types) semantics (bioimageflow_core.types.ImageSpec attribute) SequentialEngine (class in bioimageflow.engine) serialize_constant() built-in function serialize_image_spec() built-in function serialize_input_schema() built-in function serialize_output_schema() built-in function

set_active_workflow() (in module bioimageflow.node) set_constant() (bioimageflow.session.WorkflowSession method) set_enabled() (bioimageflow.session.WorkflowSession method) shape (bioimageflow_core.types.SharedArray attribute) SharedArray (class in bioimageflow_core.types) shutdown_all() (bioimageflow.env_manager.WetlandsEnvManager method) skipped (bioimageflow.engine.NodePlan property) SKIPPED (bioimageflow.engine.NodePlanStatus attribute) skipped (bioimageflow.engine.NodeStep property) source_node (bioimageflow.workflow.WorkflowOutputPort attribute) source_output (bioimageflow.workflow.WorkflowOutputPort attribute) source_processing_signature_material() (in module bioimageflow.engine) SourceToolUpstreamError spec (bioimageflow.workflow.WorkflowEnvironment attribute) SPECTRAL_ANALYSIS (bioimageflow_core.tool.Category attribute) SPOT_DETECTION (bioimageflow_core.tool.Category attribute) status (bioimageflow.engine.NodePlan attribute) (bioimageflow.workflow.InvalidatedSelection attribute) (bioimageflow.workflow.ProgressEvent attribute) step (bioimageflow_core.types.GUIMeta attribute) STITCHING (bioimageflow_core.tool.Category attribute) stop() (bioimageflow.env_manager.WetlandsEnvManager method) Storage (class in bioimageflow.storage) submit_process_batch() (bioimageflow.env_manager.WetlandsEnvManager method) supported (bioimageflow.storage.OutputViewCapability attribute)

T

tags (bioimageflow.registry.ToolMetadata attribute) (bioimageflow_core.tool.BaseTool attribute) targets (bioimageflow.workflow.WorkflowInputPort attribute) Template (class in bioimageflow_core.tool) timestamp (bioimageflow.workflow.ProgressEvent attribute) to_dict() (bioimageflow.session.WorkflowSession method) (bioimageflow.storage.CurrentPointer method) (bioimageflow.storage.RecordManifest method) (bioimageflow.workflow.OutputView method) (bioimageflow.workflow.Workflow method) (bioimageflow_core.arguments.ExecutionContext method) to_validation_error() (bioimageflow.node.BindingError method) (bioimageflow.node.ColumnNotFoundError method) (bioimageflow.node.IndexAlignmentError method) (bioimageflow.node.SourceToolUpstreamError method)

to_workflow() (bioimageflow.session.WorkflowSession method) tool (bioimageflow.engine.NodeStep property) ToolMetadata (class in bioimageflow.registry) ToolRegistry (class in bioimageflow.registry) topological_order() (bioimageflow.workflow.Workflow method) (in module bioimageflow.engine) total_rows (bioimageflow.workflow.ProgressEvent attribute) TRACKING (bioimageflow_core.tool.Category attribute) transform() (bioimageflow.dataframe_tool.DataFrameTool method)

U

UNEXECUTED (bioimageflow.engine.NodePlanStatus attribute) update_latest_node() (bioimageflow.storage.Storage method)

update_latest_success_run() (bioimageflow.storage.Storage method) upstream (bioimageflow.engine.NodePlan attribute) UTILITIES (bioimageflow_core.tool.Category attribute)

V

validate() (bioimageflow.session.WorkflowSession method) (bioimageflow.storage.RecordManifest method) (bioimageflow.workflow.Workflow method) validate_parameters() built-in function validate_relative_posix_path() (in module bioimageflow.storage) validate_template() (in module bioimageflow.template)

ValidationError (built-in class) ValidationErrorKind (built-in variable) version (bioimageflow.registry.ToolMetadata attribute) views_root (bioimageflow.storage.Storage property) VOLUMETRIC (bioimageflow_core.types.Layout attribute) VOLUMETRIC_CHANNEL (bioimageflow_core.types.Layout attribute) VOLUMETRIC_TIME (bioimageflow_core.types.Layout attribute) VOLUMETRIC_TIME_CHANNEL (bioimageflow_core.types.Layout attribute)

W

WetlandsEnvManager (class in bioimageflow.env_manager) work_dir (bioimageflow_core.arguments.ExecutionContext attribute) worker_env (bioimageflow.workflow.WorkflowEnvironment attribute) worker_timeout (bioimageflow.workflow.WorkflowEnvironment attribute) WorkerTaskError WorkerTimeoutError workflow (bioimageflow.workflow.WorkflowInputRef attribute) Workflow (class in bioimageflow.workflow)

WorkflowCancelledError WorkflowEnvironment (class in bioimageflow.workflow) WorkflowInputPort (class in bioimageflow.workflow) WorkflowInputRef (class in bioimageflow.workflow) WorkflowNode (class in bioimageflow.workflow_node) WorkflowOutputPort (class in bioimageflow.workflow) WorkflowSession (class in bioimageflow.session) write_run_metadata() (bioimageflow.storage.Storage method) write_run_node_result() (bioimageflow.storage.Storage method)

Z

zero_row_scalar_outputs (bioimageflow_core.tool.ProcessingTool attribute)